Darrington M, Dalmay T, Morrison NI, Chapman T (2017) Implementing the sterile insect technique with RNA interference - a review. Entomologia Experimentalis et Applicata 164: 155-75. 

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Bradley D, Xu P, Mohorianu I, Whibley A, Field D, Tavares H, Couchman M, Copsey L, Carpenter R, Li M, Li Q, Xue Y, Dalmay T, Coen E (2017) Evolution of flower color pattern through selection on regulatory small RNAs. Science 358: 925-98.

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Green D, Mohorianu I, Piec I, Turner J, Beadsmoore C, Toms A, Ball R, Nolan J, McNamara I, Dalmay T, Fraser WD (2017) MicroRNA expression in a phosphaturic mesenchymal tumour. Bone Reports 7: 63-69.

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Mohorianu I, Bretman A, Smith DT, Fowler EK, Dalmay T, Chapman T (2017) Comparison of alternative approaches for analysing multi-level RNA-seq data. PLOS One 12: e0182694.

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Özkan S, Mohorianu I, Xu P, Dalmay T, Coutts RHA (2017) Profile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses. BMC Genomics 18: 416. 

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Mohorianu I, Bretman A, Smith DT, Fowler EK, Dalmay T, Chapman T (2017) Genomic responses to the socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals. RNA 23: 1048-1059. 

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Paicu C, Mohorianu I, Stocks M, Xu P, Coince A, Billmeier M, Dalmay T, Moulton V, Moxon S (2017) miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets. Bioinformatics 33: 2446-2454.

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Green D, Mohorianu I, McNamara I, Dalmay T, Fraser WD (2017) miR-16 is highly expressed in Paget's associated osteosarcoma. Endocrine Related Cancer 24: 27-31. 

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Collins DH, Mohorianu I, Beckers M, Moulton V, Dalmay T, Bourke AF (2017) MicroRNAs Associated with Caste Determination and Differentiation in a Primitively Eusocial Insect. Scientific Reports 7: 45674.

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Beckers M, Mohorianu I, Stocks M, Applegate C, Dalmay T, Moulton V (2017) Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench. RNA 23: 823-835.

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Mathers TC, Chen Y, Kaithakottil G, Legeai F, Mugford ST, Baa-Puyoulet P, Bretaudeau A, Clavijo B, Colella S, Collin O, Dalmay T, Derrien T, Feng H, Gabaldón T, Jordan A, Julca I, Kettles GJ, Kowitwanich K, Lavenier D, Lenzi P, Lopez-Gomollon S, Loska D, Mapleson D, Maumus F, Moxon S, Price DR, Sugio A, van Munster M, Uzest M, Waite D, Jander G, Tagu D, Wilson AC, van Oosterhout C, Swarbreck D, Hogenhout SA (2017) Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology 18: 27. 

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Omidvar V, Mohorianu I, Dalmay T, Zheng Y, Fei Z, Pucci A, Mazzucato A, Večeřová V, Sedlářova M, Fellner M (2017) Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant. PLOS One 12: e0170715.

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Illana A, Marconi M, Rodríguez-Romero J, Xu P, Dalmay T, Wilkinson MD, Ayllón MÁ, Sesma A (2017) Molecular characterisation of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae. Archives Virology 162: 891-895.

 

Green D, Fraser WD, Dalmay T (2016) Transfer RNA-derived small RNAs in the cancer transcriptome. Pflugers Archives 468(6): 1041-7.

 

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K,Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X1, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW,Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW,Lok S, Christoffels A, Orbán L (2016) Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding. PLOS Genetics 12(4): e1005954.

 

Green D, Dalmay T, Chapman T (2016) Microguards and micromessengers of the genome. Heredity 116(2): 125-34.

 

Omidvar V, Mohorianu I, Dalmay T, Fellner M (2015) Identification of miRNAs with potential roles in regulation of anther development and male sterility in 7B-1 male-sterile tomato mutant. BMC Genomics 16(1): 878. 

 

Ahmed A, Ward NJ, Moxon S, Lopez-Gomollon S, Viaut C, Tomlinson ML, Patrushev I, Gilchrist MJ, Dalmay T, Dotlic D, Münsterberg AE, Wheeler GN (2015) A database of microRNA expression patterns in Xenopus laevis. PLOS One 10(10): e0138313.

 

Green D, Dalmay T, Fraser WD (2015) Role of miR-140 in embryonic bone development and cancer. Clinical Science 129(10): 863-73.

 

Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, et al (2015) The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology 16: 76.

 

Xu P, Billmeier M, Mohorianu I, Green D, Fraser WD, Dalmay T (2015) An improved protocol for small RNA library construction using high definition adapters. Methods in Next Generation Sequencing 2: 1-10.

 

Trieu T, Calo S, Nicolás FE, Vila A, Moxon S, Dalmay T, Torres-Martínez S, Garre V, Ruiz-Vázquez RM (2015) A non-canonical RNA silencing pathway Promotes mRNA degradation in basal fungi. PLOS Genetics 11(4): e1005168

 

Fricke C, Green D, Smith D, Dalmay T and Chapman T (2014) MicroRNAs influence reproductive responses by females to male sex peptide in Drosophila melanogaster. Genetics 198(4):1603-19.

 

Lopez-Gomollon S, Beckers M, Rathjen T, Moxon S, Maumus F, Mohorianu I, Moulton V, Dalmay T, Mock T. (2014) Global discovery and characterization of small non-coding RNAs in marine microalgae. BMC Genomics. 15(1):697.

 

. De Felice B, Annunziata A, Fiorentino G, Borra M, Biffali E, Coppola C, Cotrufo R, Brettschneider J, Giordana ML, Dalmay T, Wheeler G, D'Alessandro R. (2014) miR-338-3p is over-expressed in blood, CFS, serum and spinal cord from sporadic amyotrophic lateral sclerosis patients. Neurogenetics, 15(4):243-53.

 

Xu P, Mohorianu I, Yang L, Zhao H, Gao Z, Dalmay T. (2014) Small RNA profile in moso bamboo root and leaf obtained by high definition adapters. PLoS One. 9(7):e103590

 

Jefferson M, Donaszi-Ivanov A, Pollen S, Dalmay T, Saalbach G, Powell PP. (2014) Host factors that interact with the pestivirus N-terminal protease, npro, are components of the ribonucleoprotein complex. J Virol. 88(18):10340-53.

 

Hall AE, Turnbull C, Dalmay T. (2013) Y RNAs: recent developments. Biomol Concepts. 4(2):103-10.

 

Dalmay T. (2013) Mechanism of miRNA-mediated repression of mRNA translation. Essays Biochem. 54:29-38.

 

Donaszi-Ivanov A, Mohorianu I, Dalmay T, Powell PP. (2013) Small RNA Analysis in Sindbis Virus Infected Human HEK293 Cells. PLoS One. 8(12):e84070.

 

Mapleson D, Moxon S, Dalmay T, Moulton V. (2013) MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. J Exp Zool B Mol Dev Evol. 320(1):47-56

 

Nicolas FE, Dalmay T. (2013) New evidence supports the notion that microRNA-140 may play a role in the early stages of bone development. Arthritis & Rheum. 65(6):1668-9

 

Mohorianu I, Stocks MB, Wood J, Dalmay T, Moulton V. (2013) CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. RNA Biol. 10(7):1221-30.

 

Hall AE, Dalmay T. (2013) Discovery of novel small RNAs in the quest to unravel genome complexity. Biochem Soc Trans. 41(4):866-70.

 

Cervantes M, Vila A, Nicolás FE, Moxon S, de Haro JP, Dalmay T, Torres-Martínez S, Ruiz-Vázquez RM. (2013) A Single Argonaute Gene Participates in Exogenous and Endogenous RNAi and Controls Cellular Functions in the Basal Fungus Mucor circinelloides. PLoS One. 8(7):e69283

 

Dalmay T. (2013) Mechanism of miRNA-mediated repression of mRNA translation. In the series of Essays Biochemistry: The role of non-coding RNAs in biology 54(1):29-38. London : Portland Press Limited, ISBN: 9781855781900 1855781905. Edited by Mark A. Lindsay and Sam Griffiths-Jones

 

Grimm D, Dalmay T, van Rij RP. (2012) Everybody wins! Poland hosts thrilling competitions of viruses, RNAi and football teams. EMBO Rep. 13(10):874-6.

 

Mohorianu I, Lopez-Gomollon S, Schwach F, Dalmay T and Moulton V (2012) FiRePat-Finding Regulatory Patterns between sRNAs and Genes. Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery 2(3): 273-284

 

Lopez-Gomollon S, Mohorianu I, Szittya G, Moulton V, Dalmay T. (2012) Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions. Planta. 236(6):1875-87

 

Matthewman CA, Kawashima CG, Húska D, Csorba T, Dalmay T, Kopriva S. (2012) miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis. FEBS Lett. 586(19):3242-8

 

Heliconius Genome Consortium (2012) Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 487(7405):94-8.

 

Tomato Genome Consortium. (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485(7400):635-41.

 

Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T. (2012) Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence 3(1):4.

 

Stocks MB, Moxon S, Mapleson D, Woolfenden HC, Mohorianu I, Folkes L, Schwach F, Dalmay T, Moulton V. (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics. 28(15):2059-61.

 

Song JB, Huang SQ, Dalmay T, Yang ZM. (2012) Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS. Plant Cell Physiol. 53(7):1283-94.

 

Goljanek-Whysall K, Pais H, Rathjen T, Sweetman D, Dalmay T, Münsterberg A. (2012) Regulation of multiple target genes by miR-1/miR-206 is pivotal for C2C12 myoblast differentiation. J Cell Sci. 125(Pt 15):3590-600.

 

Nicolas FE, Hall AE, Csorba T, Turnbull C, Dalmay T. (2012) Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Lett. 586(8):1226-30.

 

Dalmay (2012) Evolution of Plant MicroRNAs. In: eLS 2012, John Wiley & Sons, Ltd: Chichester http://www.els.net/ [DOI: 10.1002/9780470015902.a0023756]

 

Folkes L, Moxon S, Woolfenden HC, Stocks MB, Szittya G, Dalmay T, Moulton V. (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Res. 40(13):e103.

 

Swingler TE, Wheeler G, Carmont V, Elliott HR, Barter MJ, Abu-Elmagd M, Donell ST, Boot-Handford RP, Hajihosseini MK, Münsterberg A, Dalmay T, Young DA, Clark IM. (2012) The expression and function of microRNAs in chondrogenesis and osteoarthritis. Arthritis Rheum. 64(6):1909-19.

 

Pais H, Moxon S, Dalmay T, Moulton V. (2011) Small RNA discovery and characterisation in eukaryotes using high-throughput approaches. Adv Exp Med Biol. 2011;722:239-54.

 

Goljanek-Whysall K, Sweetman D, Abu-Elmagd M, Chapnik E, Dalmay T, Hornstein E, Münsterberg A. (2011) MicroRNA regulation of the paired-box transcription factor Pax3 confers robustness to developmental timing of myogenesis. Proc Natl Acad Sci U S A. 108(29):11936-41.

 

Mohorianu, I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S, Szittya, G, Sorefan, K, Moulton, V and Dalmay, T (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. Plant Journal, 67(2):232-46.

 

Nicolas FE, Pais H, Schwach F, Lindow M, Kauppinen S, Vincent Moulton V and Dalmay T (2011) mRNA expression profiling reveals conserved and non-conserved miR-140 targets. RNA Biology, 8(4):607-615

 

Kawashima, C., Matthewman, C.,Huang, S.,Lee, BR., Yoshimoto, N., Koprivova, A., Rubio-Somoza, I., Todesco, M., Rathjen, T., Saito, K., Takahashi, H., #Dalmay, T., #Kopriva, S. (2011) Interplay of SLIM1 and miR395 in regulation of sulfate assimilation in Arabidopsis. Plant Journal, 66(5):863-76

 

Surridge AK, Lopez-Gomollon S, Moxon S, Maroja LS, Rathjen T, Nadeau NJ, #Dalmay T, #Jiggins CD. (2011) Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. BMC Genomics, 12:62.

 

Nicolas FE, Lopez-Gomollon S, Lopez-Martinez AF, Dalmay T. (2011) Silencing human cancer: identification and uses of microRNAs. Recent Pat Anticancer Drug Discov. 6(1):94-105.

 

Pais, H., Moxon, S., Dalmay, T. and Moulton V. (2011) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. RNA infrastructure and networks (Edited by L. Collins), in Advances in Experimental Medicine and Biology, 722:239-254. Landes Bioscience, ISBN: 978-1-4614-0331-9, DOI: 10.1007/978-1-4614-0332-6_16

 

Dalmay, T (2011) MicroRNAs in Development: Methods and Protocols (Edited by T. Dalmay) in the series of Methods in Molecular Biology, Humana Press, ISBN: 1617790826

 

López-Gomollón S, Dalmay T. (2010) Recent patents in RNA silencing in plants: constructs, methods and applications in plant biotechnology. Recent Pat DNA Gene Seq. 4(3):155-66.

 

Ho T, Wang L, Huang L, Li Z, Pallett DW, Dalmay T, Ohshima K, Walsh JA, Wang H. (2010) Nucleotide bias of DCL and AGO in plant anti-virus gene silencing. Protein Cell. 1(9):847-58.

 

Pantaleo V, Saldarelli P, Miozzi L, Giampetruzzi A, Gisel A, Moxon S, Dalmay T, Bisztray G, Burgyan J. (2010) Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology. 408(1):49-56.

 

Nicolas FE, Moxon S, de Haro JP, Calo S, Grigoriev IV, Torres-Martínez S, Moulton V, Ruiz-Vázquez RM, Dalmay T. (2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Res. 38:5535-41.

 

Dalmay, T (2010) Short RNAs in tomato. Journal of Integrative Plant Biology, 52:388-392.

 

Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, #Dalmay T and #Burgyan J (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. Plant Journal, 62(6):960-76.

 

Szittya G, Moxon S, Pantaleo V, Toth G, Rusholme R, Moulton V, Burgyan J, Dalmay T (2010) Structural and Functional Analysis of Viral siRNAs. PLoS Pathogens, 6(4):e1000838

 

Pais H, Nicolas FE, Soond SM, Swingler TE, Clark IM, Chantry A, Moulton V, Dalmay T. (2010) Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level. RNA, 16(3):489-94.

 

Trindade I, Capitão C, Dalmay T, Fevereiro MP, Santos DM. (2010) miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta, 231(3):705-16.

 

Dalmay, T (2010) Detection of small non-coding RNAs. Protocols in Plant Developmental Biology (Edited by L. Hennig and C. Kohler) in the series of Molecular Biology, Humana Press, ISBN: 1064-3745, doi: 10.1007/978-1-60761-765-5

 

Navarro B, Pantaleo V, Gisel A, Moxon S, Dalmay T, Bisztray G, Di Serio F, Burgyán J. (2009) Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction. PLoS One. 4(11):e7686.

 

Schwach F, Moxon S, Moulton V, Dalmay T. (2009) Deciphering the diversity of small RNAs in plants: the long and short of it. Brief Funct Genomic Proteomic. 8(6):472-81.

 

Nicolas FE, Lopez-Gomollon S, Lopez-Martinez AF, Dalmay T. (2009) RNA silencing: Recent developments on miRNAs. Recent Pat DNA Gene Seq. 3(2):77-87.

 

Johnston, IA., Lee, HT., Macqueen, DJ., Paranthaman, K., Kawashima, C., Anwar, A., Kinghorn, JR. and Dalmay, T. (2009) Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genomewide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes. The Journal of Experimental Biology, 212:1781-1793.

 

Lewis, M., Quint, E., Glazier, AM., Fuchs, H., De Angelis, MH., Langford, C., Van Dongen, S., Abreu-Goodger, C., Piipari, M., Redshaw, N., Dalmay, T., Moreno Pelayo, MA., Enright, A. and Steel, KP. (2009) An ENU-induced mutation of a miRNA associated with progressive hearing loss. Nature Genetics, 41(5):614-8.

 

Mencía, A., Modamio-Høybjør, S., Redshaw, N., Morín, M., Mayo-Merino, F., Olavarrieta, L., Aguirre, LA., del Castillo, I., Steel, KP., Dalmay, T., Moreno,  F. and Moreno-Pelayo, MA. (2009) Mutations in the seed region of the human miR-96 are responsible for non-syndromic progressive hearing loss. Nature Genetics, 41(5):609-13.

 

Rathjen, T., Pais, H., Sweetman, D., Moulton, V., Munsterberg, A. and Dalmay, T. (2009) High throughput sequencing of microRNAs in chicken somites. FEBS Letters, 583(9):1422-6.

 

Redshaw, N., Wheeler, G., Hajihosseini, MK. and Dalmay, T. (2009) microRNA-449 is a putative regulator of choroid plexus development and function. Brain Research, 1250:20-6.

 

Kawashima, CG., Yoshimoto, N., Maruyama-Nakashita, A., Tsuchiya, Y., Saito, K., Takahashi, H. and Dalmay, T. (2009) Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant Journal, 57(2):313-21.

 

Dalmay, T (2008) Identification of genes targeted by microRNAs. Biochemical Society Transactions, 36:1194-6.

 

Szittya, G., Moxon, S., Santos, DM., Jing, R., Fevereiro, MPS., Moulton, V. and Dalmay, T. (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9:593.

 

Nicolas, FE., Pais, H., Schwach, F., Lindow, M., Kauppinen, S., Moulton, V., Dalmay, T. (2008) Experimental identification of microRNA-140 targets by silencing and over-expressing miR-140. RNA, 14, 2513-2520.

 

Moxon S, Schwach F, Maclean D, Dalmay T, Studholme DJ, Moulton V. (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24(19):2252-3

 

Sweetman, D. Goljanek, K. Rathjen, T. Oustinana, S. Braun, T. Dalmay, T. and Munsterberg, A. (2008) Specific requirements of MRFs for the expression of muscle specific microRNAs, miR-1, miR-206 and miR-133. Developmental Biology, 321(2):491-9

 

Moxon, S. Jing, R. Szittya, G. Schwach, F. Rusholme Pilcher, RL. Moulton, V. and Dalmay, T (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18(10):1602-9

 

Thien X. Ho, Rachel Rusholme, Tamas Dalmay, and Hui Wang (2008). Cloning of short interfering RNAs from virus-infected plants. Methods Mol Biol. 451: 229-41

 

Dalmay, T (2008) MicroRNAs and cancer. Journal of Internal Medicine, 263:366-375   

 

Thien Ho, Rachel Rusholme, Mary-Lou Edwards, Ian Cooper, Tamas Dalmay, Hui Wang (2008) Evidence for GC preference by monocot Dicer-like proteins.  Biochemical and Biophysical Research Communications, 368(2):433-7

 

Szittya G, Dalmay T and Burgyan J. (2008) Plant Antiviral Defense: Gene Silencing Pathway. Encyclopedia of Virology, 5 vols. (Edited by B.W.J. Mahy and M. H. V. Van Regenmortel), pp. 141-149, Elsevier, ISBN: 0123739357

 

Dalmay, T (2008) MicroRNAs. Encyclopedia of Cancer 2nd edition (Edited by M. Schwab), Springer, ISBN: 978-3-540-36847-2

 

Csorba T, Bovi A, *Dalmay T, *Burgyan J. (2007) The p122 subunit of Tobacco mosaic virus replicase is a potent silencing suppressor and compromises both siRNA and miRNA mediated pathways. J Virol. 81(21):11768-80

 

Ho T, Wang H, Pallett D, Dalmay T. (2007) Evidence for targeting common siRNA hotspots and GC preference by plant Dicer-like proteins. FEBS Lett. 581(17):3267-72.

 

Pilcher RL, Moxon S, Pakseresht N, Moulton V, Manning K, Seymour G, Dalmay T. (2007) Identification of novel small RNAs in tomato (Solanum lycopersicum). Planta 226(3):709-17

 

Phillips, J, Dalmay, T and Bartels, D (2007) The role of small RNAs in abiotic stress. FEBS Letters, 581(19):3592-7

 

Wheeler, G, Valoczi, E, Havelda, Z and Dalmay, T (2007) In situ detection of animal and plant miRNAs. DNA and Cell Biology Apr 2007, Vol. 26, No. 4: 251-255.

 

Hernandez-Pinzon, I, Yelina, NE, Scwach, F, Studholme, D, Baulcombe, D and Dalmay T (2007) SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. The Plant Journal, 50(1):140-8.

 

Thien X. Ho, Rachel Rusholme, Tamas Dalmay, and Hui Wang (2007). Cloning of short interfering RNA from virus-infected plants. Plant Virology Protocols II. (ed. G. Foster et al.), pp229-242, Springer-Verlag New York, ISBN: 9781588298270

 

Dalmay, T and Edwards, D (2006) MicroRNAs and the Hallmarks of Cancer, Oncogene, 25, 6170-6175

 

Rathjen, T, Hunton, C, McConkey, G and Dalmay, T (2006) Analysis of short RNAs in the malaria parasite and its red blood cell host, FEBS Letters, 580(22):5185-8

 

Tuddenham, L, Wheeler, G, Ntounia-Fousara, S, Waters, J, Hajihosseini, MK, Clark, I and Dalmay, T (2006) The cartilage specific microRNA-140 targets Histone Deacetylase 4 in mouse cells. FEBS Letters, 580(17):4214-4217

 

Sweetman, D, Rathjen, T, Jefferson, M, Wheeler, G, Smith, TG, Wheeler, GN, Münsterberg, A and Dalmay, T (2006) FGF-4 signalling is involved in mir-206 expression in developing somites of chicken embryos. Developmental Dynamics, 235: 136(1-2):217-23

 

Ho, T, Pallett, D, Rusholme, R, Dalmay, T, and Wang, H (2006) A simplified method for cloning of short interfering RNAs from Brassica juncea infected with Turnip mosaic potyvirus and Turnip crinkle carmovirus. Journal of Virological Methods, 136:217-23

 

Wheeler, G., Ntonuia-Fousara, S., Granda, B., Rathjen, T. and Dalmay, T. (2006) Identification of new central nervous system specific mouse microRNAs. FEBS Letters, 580(9):2195-200

 

Dalmay, T (2006) Short RNAs in environmental adaptation, Proceedings of The Royal Society B, 273: 1579-1585

 

Dalmay, T. (2005) Virus Induced Gene Silencing, in Plant Epigenetics. (ed. Meyer, P.) pp: 223-237,  Blackwell Publishing, Oxford, ISBN 1405129778

 

Herr, A. J., Jensen, M. B., Dalmay, T. and Baulcombe, D. (2005) RNA polymerase IV directs silencing of endogenous DNA, Science, 308, 118-20

 

Szittya G, Silhavy D, Dalmay T, Burgyan J. (2002) Size-dependent cell-to-cell movement of defective interfering RNAs of Cymbidium ringspot virus. J Gen Virol. 83:1505-10

 

Dalmay, T., Horsefield, R., Braunstein, T.H. and Baulcombe, D. 2001: SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO Journal 20, 2069-2077

 

Dalmay, T., Hamilton, A., Rudd, S., Angell, S. and Baulcombe, D. 2000: An RNA-dependent RNA polymerase is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 101, 543-553

 

Dalmay, T., Hamilton, A., Mueller, E. and Baulcombe D. 2000: Potato virus X amplicons in Arabidopsis mediate genetic and epigenetic gene silencing. The Plant Cell 12, 369-379

 

Molnar, A., Havelda, Z., Dalmay, T., Szutorisz, H. and Burgyan, J. 1997: Complete nucleotide sequence of tobacco necrosis virus strain D and genes required for RNA replication and virus movement. Journal of General Virology 78, 1235-1239

 

Havelda, Z., Dalmay, T. and Burgyan, J. 1997: Secondary structure-dependent evolution of cymbidium ringspot virus defective interfering RNA. Journal of General Virology 78, 1227-1234

 

Havelda, Z., Dalmay, T. and Burgyan, J. 1995: Localization of cis-acting sequences essential for cymbidium ringspot tombusvirus defective interfering RNA replication. Journal of General Virology 76, 2311-2316

 

D’Aquino, L., Dalmay, T., Burgyan, J., Ragozzino, A. and Scala, F. 1995: Host range and sequence-analysis of an isolate of potato virus Y inducing venous necrosis in pepper. Plant Disease 79 (10), 1046-1050

 

Dalmay, T. and Rubino, L. 1995: Replication of cymbidium ringspot virus satellite RNA mutants. Virology 206, 1092-1098

 

Dalmay, T., Szittya, Gy. and Burgyan, J. 1995: Generation of defective interfering RNA dimers of cymbidium ringspot tombusvirus. Virology 207, 510-517

 

Burgyan, J., Salanki, K., Dalmay, T. and Russo, M. 1994: Expression of homologous and heterologous viral coat protein-encoding genes using recombinant DI RNA from cymbidium ringspot tombusvirus. Gene 138, 159-163

 

Dalmay, T. and Rubino, L. 1994: The nature of multimeric forms of cymbidium ringspot tombusvirus satellite RNA. Archives of Virology 138, 161-167

 

Kollar, A., Thole, V., Dalmay, T., Salamon, P. and Balazs, E. 1993: Efficient pathogen-derived resistance induced by integrated potato virus Y coat protein gene in tobacco. Biochimie 75, 623-629

 

Kollar, A., Dalmay, T. and Burgyan, J. 1993 : Defective interfering RNA-mediated resistance against cymbidium ringspot tombusvirus transgenic plants. Virology 193, 313-318

 

Burgyan, J., Tavazza, M., Dalmay, T., Lucioli, A. and Balazs, E. 1993: Consequences of gene transfer between distantly related tombusviruses. Gene 129, 191-196

 

Thole, V., Dalmay, T., Burgyan, J. and Balazs, E. 1993 : Cloning and sequencing of potato virus Y (Hungarian isolate) genomic RNA. Gene 123, 149-156

 

Dalmay, T., Russo, M. and Burgyan, J. 1993: Repair in vivo of altered 3’ terminus of cymbidium ringspot tombusvirus RNA. Virology 192, 551-555

 

Dalmay, T., Rubino, L., Burgyan, J., Kollar, A. and Russo, M. 1993: Functional analysis of cymbidium ringspot virus genome. Virology 194, 697-704

 

Dalmay, T., Rubino, L., Burgyan, J. and Russo, M. 1992: Replication and movement of a coat protein mutant of cymbidium ringspot tombusvirus. Molecular Plant-Microbe Interaction 5, 379-383

 

Burgyan, J., Dalmay, T. Rubino, L. and Russo, M. 1992: The replication of cymbidium ringspot tombusvirus defective interferingsatellite RNA hybrid molecules. Virology 190, 579-586

 

Dalmay, T. and Balazs, E. 1990 : Nucleotide sequence of an altered virulence potato virus Y coat protein gene. Nucleic Acids Research 18, 6721